Spectronaut 18.6.231227.55695
Computer Name: DJWKJJ3
User Domain Name: OIST
User Name: RAJKUMAR-SINGH
Analysis Mode: UI
Analysis Type: Peptide-Centric
Analysis Date: 09-May-2024 15:48:07 UTC+0


[BEGIN-SETTINGS]
Settings Used: BGS Factory Settings
   ├─ Calibration
   │  ├─ Calibration Mode:	Automatic
   │  ├─ MZ Extraction Strategy:	Maximum Intensity
   │  ├─ Used Biognosys' iRT Kit:	False
   │  ├─ Allow source specific iRT Calibration:	True
   │  ├─ Precision iRT:	True
   │  │  ├─ Exclude De-amidated Peptides:	True
   │  │  └─ iRT <-> RT Regression Type:	Local (Non-Linear) Regression
   │  ├─ Calibration Carry-Over:	False
   │  ├─ MS1 Mass Tolerance Strategy:	System Default
   │  └─ MS2 Mass Tolerance Strategy:	System Default
   ├─ Identification
   │  ├─ Precursor Qvalue Cutoff:	0.01
   │  ├─ Precursor PEP Cutoff:	0.2
   │  ├─ Protein Qvalue Cutoff (Experiment):	0.01
   │  ├─ Protein Qvalue Cutoff (Run):	0.05
   │  ├─ Protein PEP Cutoff:	0.75
   │  ├─ Single Hit Definition:	By Stripped Sequence
   │  ├─ Exclude Single Hit Proteins:	False
   │  ├─ Exclude Duplicate Assays:	True
   │  ├─ Exclude Predicted Fragment Scores:	False
   │  ├─ Generate Decoys:	True
   │  │  ├─ Decoy Generation Method:	Mutated
   │  │  │  └─ Preferred Fragment Source:	NN Predicted Fragments
   │  │  └─ Decoy Limit Strategy:	Dynamic
   │  │     └─ Library Size Fraction:	0.1
   │  └─ Pvalue Estimator:	Kernel Density Estimator
   ├─ Library Filters
   │  ├─ Fragment Ions:	
   │  │  ├─ Ion AA Length:	True
   │  │  │  └─ N:	3
   │  │  ├─ Ion Charge:	False
   │  │  ├─ Ion Loss Type:	False
   │  │  ├─ Ion Type:	False
   │  │  ├─ m/z :	True
   │  │  │  ├─ Max:	3000
   │  │  │  └─ Min:	200
   │  │  └─ Relative Intensity:	True
   │  │     └─ Min:	1
   │  └─ Precursors:	
   │     ├─ Amino Acids:	False
   │     ├─ Best N Fragments per Peptide:	True
   │     │  ├─ Max:	6
   │     │  └─ Min:	3
   │     ├─ Best N Peptides per Protein Group:	False
   │     ├─ Channel Count:	False
   │     ├─ FASTA Matched:	False
   │     ├─ Missed Cleavage:	False
   │     ├─ Modifications:	None
   │     ├─ Peptide Charge:	False
   │     └─ Proteotypicity:	False
   ├─ Pipeline Mode
   │  ├─ Export All XICs:	False
   │  ├─ Generate SNE File:	True
   │  │  └─ Store Ion traces in SNE:	True
   │  ├─ Post Analysis Reports:	
   │  │  ├─ CV Density Line Chart:	False
   │  │  ├─ CVs Below X Bar Chart:	False
   │  │  ├─ Data Completeness Bar Chart:	False
   │  │  ├─ Run Identifications Bar Chart:	False
   │  │  └─ Scoring Histograms:	False
   │  ├─ Report Schema:	BGS Factory Report (Normal)
   │  └─ Reporting Unit:	Across Experiment
   ├─ Post Analysis
   │  ├─ Differential Abundance Testing:	Unpaired t-test
   │  │  ├─ Assume Equal Variance:	False
   │  │  ├─ Group-Wise Testing Correction:	False
   │  │  ├─ Log2 Ratio Candidate Filter:	0.58
   │  │  └─ Confidence Candidate Filter:	Qvalue
   │  │     └─ Confidence:	0.05
   │  ├─ Differential Abundance Grouping:	Major Group (Quantification Settings)
   │  │  └─ Smallest Quantitative Unit:	Major Group (Quantification Settings)
   │  │     └─ Use All MS-Level Quantities:	True
   │  ├─ Calculate Explained TIC:	None
   │  ├─ Calculate Sample Correlation Matrix:	False
   │  ├─ Gene Ontology:	C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut\geneOntology\Ontologies\bgs_default_go-basic.obo
   │  └─ Hierarchical Clustering:	True
   │     ├─ Distance Metric:	Manhattan Distance
   │     ├─ Linkage Strategy:	Ward's Method
   │     ├─ Order Runs by Clustering:	True
   │     └─ Z-score Transformation:	False
   ├─ Protein Inference
   │  └─ Protein Inference Workflow:	Automatic
   │     └─ Inference Algorithm:	IDPicker
   ├─ PTM Workflow
   │  └─ PTM Localization:	False
   ├─ Quantification
   │  ├─ Precursor Filtering:	Identified (Qvalue)
   │  │  └─ Imputation Strategy:	None
   │  ├─ Proteotypicity Filter:	None
   │  ├─ Protein LFQ Method:	Automatic
   │  ├─ Quantity MS Level:	MS2
   │  ├─ Quantity Type:	Area
   │  ├─ Cross-Run Normalization:	True
   │  │  ├─ Normalization Filter Type:	None
   │  │  ├─ Normalization Strategy:	Automatic
   │  │  └─ Row Selection:	Automatic
   │  ├─ Quantification window:	Synchronized
   │  ├─ Interference Correction:	True
   │  │  ├─ Only Identified Peptides:	True
   │  │  ├─ Exclude All Multi-Channel Interferences:	True
   │  │  ├─ MS1 Min:	2
   │  │  └─ MS2 Min:	3
   │  ├─ Major (Protein) Grouping:	by Protein Group Id
   │  ├─ Minor (Peptide) Grouping:	by Stripped Sequence
   │  ├─ Major Group Quantity:	Mean peptide quantity
   │  ├─ Major Group Top N:	True
   │  │  ├─ Max:	3
   │  │  └─ Min:	1
   │  ├─ Minor Group Quantity:	Mean precursor quantity
   │  └─ Minor Group Top N:	True
   │     ├─ Max:	3
   │     └─ Min:	1
   ├─ Workflow
   │  ├─ Multi-Channel Workflow Definition:	From Library Annotation
   │  │  └─ Fallback Option:	Labeled
   │  ├─ Profiling Strategy:	None
   │  ├─ In-Silico Library Optimization:	False
   │  └─ Unify Peptide Peaks Strategy:	None
   └─ XIC Extraction
      ├─ XIC IM Extraction Window:	Dynamic
      │  └─ Correction Factor:	1
      ├─ XIC RT Extraction Window:	Dynamic
      │  └─ Correction Factor:	1
      ├─ MS1 Mass Tolerance Strategy:	Dynamic
      │  └─ Correction Factor:	1
      └─ MS2 Mass Tolerance Strategy:	Dynamic
         └─ Correction Factor:	1
[END-SETTINGS]

[BEGIN-SETUP]
Run: 001_Kalra01_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 001_Kalra01_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210803\Raw_Data\001_Kalra01_500ng_T120SW_B2.wiff"
   ├─ Condition: YN
   ├─ Replicate: 1
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 002_Kalra02_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 002_Kalra02_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210803\Raw_Data\002_Kalra02_500ng_T120SW_B2.wiff"
   ├─ Condition: YA
   ├─ Replicate: 1
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 003_Kalra03_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 003_Kalra03_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210803\Raw_Data\003_Kalra03_500ng_T120SW_B2.wiff"
   ├─ Condition: ON
   ├─ Replicate: 1
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 004_Kalra04_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 004_Kalra04_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210803\Raw_Data\004_Kalra04_500ng_T120SW_B2.wiff"
   ├─ Condition: OA
   ├─ Replicate: 1
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 001_Kalra01_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 001_Kalra01_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210721\Raw_Data\001_Kalra01_500ng_T120SW_B2.wiff"
   ├─ Condition: YN
   ├─ Replicate: 2
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 002_Kalra02_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 002_Kalra02_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210721\Raw_Data\002_Kalra02_500ng_T120SW_B2.wiff"
   ├─ Condition: YA
   ├─ Replicate: 2
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 003_Kalra03_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 003_Kalra03_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210721\Raw_Data\003_Kalra03_500ng_T120SW_B2.wiff"
   ├─ Condition: ON
   ├─ Replicate: 2
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 004_Kalra04_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 004_Kalra04_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210721\Raw_Data\004_Kalra04_500ng_T120SW_B2.wiff"
   ├─ Condition: OA
   ├─ Replicate: 2
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 001_Kalra01_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 001_Kalra01_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210802\Raw_Data\001_Kalra01_500ng_T120SW_B2.wiff"
   ├─ Condition: YN
   ├─ Replicate: 3
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 002_Kalra02_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 002_Kalra02_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210802\Raw_Data\002_Kalra02_500ng_T120SW_B2.wiff"
   ├─ Condition: YA
   ├─ Replicate: 3
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 003_Kalra03_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 003_Kalra03_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210802\Raw_Data\003_Kalra03_500ng_T120SW_B2.wiff"
   ├─ Condition: ON
   ├─ Replicate: 3
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

Run: 004_Kalra04_500ng_T120SW_B2.wiff
   ├─ Vendor: Absciex
   ├─ File: 004_Kalra04_500ng_T120SW_B2
   ├─ Path: "F:\DATA\Ishikawa_U\RAW_Data\Raj\.wiff files\210802\Raw_Data\004_Kalra04_500ng_T120SW_B2.wiff"
   ├─ Condition: OA
   ├─ Replicate: 3
   ├─ HTRMS Version: 18.6.231227.55695
   ├─ Libraries Used
   │  ├─ 240403-mouse-dda-lib-riken-files
   │  │  ├─ File Path: C:/Users/rajkumar-singh/AppData/Roaming/Spectronaut/spectral_libraries/20240403_122821_240403-mouse-dda-lib-riken-files.kit
   │  │  ├─ Precursors Targeted: 30,794
   │  │  ├─ Decoys Added: 4,933
   │  │  └─ Decoy Method: Mutated - [NN Predicted Fragments]
   │  └─ Calibration Kit
   │     ├─ File Path: C:\Users\rajkumar-singh\AppData\Roaming\Spectronaut/18.6.231227/iRTKit\202010206_iRT-SN15.kit
   │     ├─ Precursors Targeted: 21
   │     ├─ Decoys Added: 1,008
   │     └─ Decoy Method: Mutated - [NN Predicted Fragments]
   ├─ Protein Databases Used
   │  ├─ iRT
   │  │  ├─ Protein Entries: 11
   │  │  ├─ Original File: iRT.fasta
   │  │  ├─ Date Created: 24-April-2017 09:27:39 UTC+0
   │  │  ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │  │  └─ Parsing Rule: iRT peptides-fusion.fasta Rule
   │  └─ Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090
   │     ├─ Protein Entries: 21,989
   │     ├─ Original File: Uniprot_Mouse_Strain_C57BL6J_UP000000589_10090.fasta
   │     ├─ Date Created: 09-August-2023 17:22:59 UTC+0
   │     ├─ Date Modified: 05-April-2024 13:20:59 UTC+0
   │     └─ Parsing Rule: UniProt FASTA
   └─ MS2 Method
      ├─ [400 - 411.5]
      ├─ [410.5 - 422]
      ├─ [421 - 431.9]
      ├─ [430.9 - 441.2]
      ├─ [440.2 - 448.9]
      ├─ [447.9 - 456.6]
      ├─ [455.6 - 463.8]
      ├─ [462.8 - 470.9]
      ├─ [469.9 - 477.5]
      ├─ [476.5 - 484.1]
      ├─ [483.1 - 490.7]
      ├─ [489.7 - 496.8]
      ├─ [495.8 - 503.4]
      ├─ [502.4 - 509.4]
      ├─ [508.4 - 515.5]
      ├─ [514.5 - 521.5]
      ├─ [520.5 - 527]
      ├─ [526 - 533.1]
      ├─ [532.1 - 538.6]
      ├─ [537.6 - 544.1]
      ├─ [543.1 - 549.5]
      ├─ [548.5 - 555]
      ├─ [554 - 560.5]
      ├─ [559.5 - 565.5]
      ├─ [564.5 - 571]
      ├─ [570 - 575.9]
      ├─ [574.9 - 581.4]
      ├─ [580.4 - 586.4]
      ├─ [585.4 - 591.3]
      ├─ [590.3 - 596.8]
      ├─ [595.8 - 601.8]
      ├─ [600.8 - 606.7]
      ├─ [605.7 - 612.2]
      ├─ [611.2 - 617.2]
      ├─ [616.2 - 622.7]
      ├─ [621.7 - 627.6]
      ├─ [626.6 - 633.1]
      ├─ [632.1 - 638.6]
      ├─ [637.6 - 644.1]
      ├─ [643.1 - 650.2]
      ├─ [649.2 - 655.7]
      ├─ [654.7 - 661.7]
      ├─ [660.7 - 667.8]
      ├─ [666.8 - 673.8]
      ├─ [672.8 - 679.9]
      ├─ [678.9 - 686.5]
      ├─ [685.5 - 693.1]
      ├─ [692.1 - 699.7]
      ├─ [698.7 - 706.3]
      ├─ [705.3 - 712.9]
      ├─ [711.9 - 719.5]
      ├─ [718.5 - 726.6]
      ├─ [725.6 - 733.2]
      ├─ [732.2 - 740.4]
      ├─ [739.4 - 748.1]
      ├─ [747.1 - 755.2]
      ├─ [754.2 - 762.9]
      ├─ [761.9 - 771.2]
      ├─ [770.2 - 778.9]
      ├─ [777.9 - 787.1]
      ├─ [786.1 - 795.9]
      ├─ [794.9 - 805.3]
      ├─ [804.3 - 814.1]
      ├─ [813.1 - 824]
      ├─ [823 - 833.9]
      ├─ [832.9 - 843.8]
      ├─ [842.8 - 854.2]
      ├─ [853.2 - 865.8]
      ├─ [864.8 - 877.9]
      ├─ [876.9 - 890.5]
      ├─ [889.5 - 904.8]
      ├─ [903.8 - 919.7]
      ├─ [918.7 - 936.7]
      ├─ [935.7 - 955.4]
      ├─ [954.4 - 977.4]
      ├─ [976.4 - 1001.6]
      ├─ [1000.6 - 1030.2]
      ├─ [1029.2 - 1070.4]
      ├─ [1069.4 - 1125.4]
      └─ [1124.4 - 1200]

[END-SETUP]

[BEGIN-LOG]
INFO:    [09/05/2024 14:15:44] -> Initializing Pipeline...
INFO:    [09/05/2024 14:15:44] -> Loading...
INFO:    [04/04/2024 17:20:04] -> Initializing Pipeline...
INFO:    [04/04/2024 17:20:04] -> Preprocessing Run #1 of 12...
INFO:    [04/04/2024 17:20:04] -> Building Spectral Library...
INFO:    [04/04/2024 17:20:05] -> Initializing Experiment...
INFO:    [04/04/2024 17:20:05] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:20:09] -> Initialize Scoring...
INFO:    [04/04/2024 17:20:09] -> Generating Scan Map...
INFO:    [04/04/2024 17:26:45] -> Initializing Workpackages...
INFO:    [04/04/2024 17:26:45] -> Performing Basic Calibration...
INFO:    [04/04/2024 17:26:45] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 17:26:46] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 17:26:46] -> Initializing Pipeline...
INFO:    [04/04/2024 17:26:46] -> Preprocessing Run #1 of 12...
INFO:    [04/04/2024 17:26:46] -> Initialize Scoring...
INFO:    [04/04/2024 17:26:46] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:26:56] -> Machine Learning...
INFO:    [04/04/2024 17:26:57] -> Pipeline executed in 10.79s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:26:59] -> Initializing Pipeline...
INFO:    [04/04/2024 17:26:59] -> Preprocessing Run #1 of 12...
INFO:    [04/04/2024 17:26:59] -> Initialize Scoring...
INFO:    [04/04/2024 17:26:59] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:27:08] -> Machine Learning...
INFO:    [04/04/2024 17:27:09] -> Pipeline executed in 10.37s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:27:12] -> Initialize Scoring...
INFO:    [04/04/2024 17:27:12] -> Preprocessing Run #2 of 12...
INFO:    [04/04/2024 17:27:12] -> Building Spectral Library...
INFO:    [04/04/2024 17:27:12] -> Initializing Experiment...
INFO:    [04/04/2024 17:27:12] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:27:12] -> Initialize Scoring...
INFO:    [04/04/2024 17:27:12] -> Generating Scan Map...
INFO:    [04/04/2024 17:37:49] -> Initializing Workpackages...
INFO:    [04/04/2024 17:37:49] -> Performing Basic Calibration...
INFO:    [04/04/2024 17:37:49] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 17:37:49] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 17:37:50] -> Initializing Pipeline...
INFO:    [04/04/2024 17:37:50] -> Preprocessing Run #2 of 12...
INFO:    [04/04/2024 17:37:50] -> Initialize Scoring...
INFO:    [04/04/2024 17:37:50] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:38:14] -> Machine Learning...
INFO:    [04/04/2024 17:38:15] -> Pipeline executed in 24.45s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:38:16] -> Initializing Pipeline...
INFO:    [04/04/2024 17:38:16] -> Preprocessing Run #2 of 12...
INFO:    [04/04/2024 17:38:16] -> Initialize Scoring...
INFO:    [04/04/2024 17:38:16] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:38:34] -> Machine Learning...
INFO:    [04/04/2024 17:38:35] -> Pipeline executed in 18.75s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:38:38] -> Initialize Scoring...
INFO:    [04/04/2024 17:38:38] -> Preprocessing Run #3 of 12...
INFO:    [04/04/2024 17:38:38] -> Building Spectral Library...
INFO:    [04/04/2024 17:38:38] -> Initializing Experiment...
INFO:    [04/04/2024 17:38:38] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:38:38] -> Initialize Scoring...
INFO:    [04/04/2024 17:38:38] -> Generating Scan Map...
INFO:    [04/04/2024 17:54:19] -> Initializing Workpackages...
INFO:    [04/04/2024 17:54:19] -> Performing Basic Calibration...
INFO:    [04/04/2024 17:54:20] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 17:54:20] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 17:54:20] -> Initializing Pipeline...
INFO:    [04/04/2024 17:54:20] -> Preprocessing Run #3 of 12...
INFO:    [04/04/2024 17:54:20] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:20] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:54:29] -> Machine Learning...
INFO:    [04/04/2024 17:54:29] -> Pipeline executed in 9s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:54:31] -> Initializing Pipeline...
INFO:    [04/04/2024 17:54:31] -> Preprocessing Run #3 of 12...
INFO:    [04/04/2024 17:54:31] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:31] -> Extracting Ion Currents...
INFO:    [04/04/2024 17:54:38] -> Machine Learning...
INFO:    [04/04/2024 17:54:40] -> Pipeline executed in 8.53s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 17:54:42] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:42] -> Preprocessing Run #4 of 12...
INFO:    [04/04/2024 17:54:42] -> Building Spectral Library...
INFO:    [04/04/2024 17:54:42] -> Initializing Experiment...
INFO:    [04/04/2024 17:54:42] -> Loading Spectral Libraries...
INFO:    [04/04/2024 17:54:42] -> Initialize Scoring...
INFO:    [04/04/2024 17:54:42] -> Generating Scan Map...
INFO:    [04/04/2024 18:00:37] -> Initializing Workpackages...
INFO:    [04/04/2024 18:00:37] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:00:38] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:00:38] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:00:38] -> Initializing Pipeline...
INFO:    [04/04/2024 18:00:38] -> Preprocessing Run #4 of 12...
INFO:    [04/04/2024 18:00:38] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:38] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:00:45] -> Machine Learning...
INFO:    [04/04/2024 18:00:46] -> Pipeline executed in 7.55s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:00:47] -> Initializing Pipeline...
INFO:    [04/04/2024 18:00:47] -> Preprocessing Run #4 of 12...
INFO:    [04/04/2024 18:00:47] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:47] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:00:54] -> Machine Learning...
INFO:    [04/04/2024 18:00:56] -> Pipeline executed in 8.25s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:00:58] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:58] -> Preprocessing Run #5 of 12...
INFO:    [04/04/2024 18:00:58] -> Building Spectral Library...
INFO:    [04/04/2024 18:00:58] -> Initializing Experiment...
INFO:    [04/04/2024 18:00:58] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:00:58] -> Initialize Scoring...
INFO:    [04/04/2024 18:00:58] -> Generating Scan Map...
INFO:    [04/04/2024 18:06:56] -> Initializing Workpackages...
INFO:    [04/04/2024 18:06:56] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:06:57] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:06:57] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:06:57] -> Initializing Pipeline...
INFO:    [04/04/2024 18:06:57] -> Preprocessing Run #5 of 12...
INFO:    [04/04/2024 18:06:57] -> Initialize Scoring...
INFO:    [04/04/2024 18:06:57] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:07:04] -> Machine Learning...
INFO:    [04/04/2024 18:07:05] -> Pipeline executed in 7.53s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:07:06] -> Initializing Pipeline...
INFO:    [04/04/2024 18:07:06] -> Preprocessing Run #5 of 12...
INFO:    [04/04/2024 18:07:06] -> Initialize Scoring...
INFO:    [04/04/2024 18:07:06] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:07:13] -> Machine Learning...
INFO:    [04/04/2024 18:07:14] -> Pipeline executed in 7.93s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:07:16] -> Initialize Scoring...
INFO:    [04/04/2024 18:07:16] -> Preprocessing Run #6 of 12...
INFO:    [04/04/2024 18:07:16] -> Building Spectral Library...
INFO:    [04/04/2024 18:07:16] -> Initializing Experiment...
INFO:    [04/04/2024 18:07:16] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:07:16] -> Initialize Scoring...
INFO:    [04/04/2024 18:07:16] -> Generating Scan Map...
INFO:    [04/04/2024 18:09:52] -> Initializing Workpackages...
INFO:    [04/04/2024 18:09:52] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:09:53] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:09:53] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:09:54] -> Initializing Pipeline...
INFO:    [04/04/2024 18:09:54] -> Preprocessing Run #6 of 12...
INFO:    [04/04/2024 18:09:54] -> Initialize Scoring...
INFO:    [04/04/2024 18:09:54] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:10:01] -> Machine Learning...
INFO:    [04/04/2024 18:10:02] -> Pipeline executed in 8.07s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:10:03] -> Initializing Pipeline...
INFO:    [04/04/2024 18:10:03] -> Preprocessing Run #6 of 12...
INFO:    [04/04/2024 18:10:03] -> Initialize Scoring...
INFO:    [04/04/2024 18:10:03] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:10:11] -> Machine Learning...
INFO:    [04/04/2024 18:10:12] -> Pipeline executed in 8.77s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:10:14] -> Initialize Scoring...
INFO:    [04/04/2024 18:10:14] -> Preprocessing Run #7 of 12...
INFO:    [04/04/2024 18:10:14] -> Building Spectral Library...
INFO:    [04/04/2024 18:10:14] -> Initializing Experiment...
INFO:    [04/04/2024 18:10:14] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:10:14] -> Initialize Scoring...
INFO:    [04/04/2024 18:10:14] -> Generating Scan Map...
INFO:    [04/04/2024 18:14:26] -> Initializing Workpackages...
INFO:    [04/04/2024 18:14:26] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:14:27] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:14:27] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:14:27] -> Initializing Pipeline...
INFO:    [04/04/2024 18:14:27] -> Preprocessing Run #7 of 12...
INFO:    [04/04/2024 18:14:27] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:27] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:14:34] -> Machine Learning...
INFO:    [04/04/2024 18:14:35] -> Pipeline executed in 7.62s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:14:36] -> Initializing Pipeline...
INFO:    [04/04/2024 18:14:36] -> Preprocessing Run #7 of 12...
INFO:    [04/04/2024 18:14:36] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:36] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:14:43] -> Machine Learning...
INFO:    [04/04/2024 18:14:44] -> Pipeline executed in 7.77s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:14:46] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:46] -> Preprocessing Run #8 of 12...
INFO:    [04/04/2024 18:14:46] -> Building Spectral Library...
INFO:    [04/04/2024 18:14:46] -> Initializing Experiment...
INFO:    [04/04/2024 18:14:46] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:14:46] -> Initialize Scoring...
INFO:    [04/04/2024 18:14:46] -> Generating Scan Map...
INFO:    [04/04/2024 18:17:31] -> Initializing Workpackages...
INFO:    [04/04/2024 18:17:31] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:17:31] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:17:31] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:17:32] -> Initializing Pipeline...
INFO:    [04/04/2024 18:17:32] -> Preprocessing Run #8 of 12...
INFO:    [04/04/2024 18:17:32] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:32] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:17:39] -> Machine Learning...
INFO:    [04/04/2024 18:17:39] -> Pipeline executed in 7.45s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:17:41] -> Initializing Pipeline...
INFO:    [04/04/2024 18:17:41] -> Preprocessing Run #8 of 12...
INFO:    [04/04/2024 18:17:41] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:41] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:17:47] -> Machine Learning...
INFO:    [04/04/2024 18:17:48] -> Pipeline executed in 7.74s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:17:50] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:50] -> Preprocessing Run #9 of 12...
INFO:    [04/04/2024 18:17:50] -> Building Spectral Library...
INFO:    [04/04/2024 18:17:50] -> Initializing Experiment...
INFO:    [04/04/2024 18:17:50] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:17:50] -> Initialize Scoring...
INFO:    [04/04/2024 18:17:50] -> Generating Scan Map...
INFO:    [04/04/2024 18:23:58] -> Initializing Workpackages...
INFO:    [04/04/2024 18:23:58] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:23:59] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:23:59] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:24:00] -> Initializing Pipeline...
INFO:    [04/04/2024 18:24:00] -> Preprocessing Run #9 of 12...
INFO:    [04/04/2024 18:24:00] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:00] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:24:07] -> Machine Learning...
INFO:    [04/04/2024 18:24:08] -> Pipeline executed in 8.24s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:24:09] -> Initializing Pipeline...
INFO:    [04/04/2024 18:24:09] -> Preprocessing Run #9 of 12...
INFO:    [04/04/2024 18:24:09] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:09] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:24:17] -> Machine Learning...
INFO:    [04/04/2024 18:24:18] -> Pipeline executed in 8.97s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:24:21] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:21] -> Preprocessing Run #10 of 12...
INFO:    [04/04/2024 18:24:21] -> Building Spectral Library...
INFO:    [04/04/2024 18:24:21] -> Initializing Experiment...
INFO:    [04/04/2024 18:24:21] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:24:21] -> Initialize Scoring...
INFO:    [04/04/2024 18:24:21] -> Generating Scan Map...
INFO:    [04/04/2024 18:26:39] -> Initializing Workpackages...
INFO:    [04/04/2024 18:26:39] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:26:40] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:26:40] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:26:40] -> Initializing Pipeline...
INFO:    [04/04/2024 18:26:40] -> Preprocessing Run #10 of 12...
INFO:    [04/04/2024 18:26:40] -> Initialize Scoring...
INFO:    [04/04/2024 18:26:40] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:26:48] -> Machine Learning...
INFO:    [04/04/2024 18:26:48] -> Pipeline executed in 8.14s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:26:50] -> Initializing Pipeline...
INFO:    [04/04/2024 18:26:50] -> Preprocessing Run #10 of 12...
INFO:    [04/04/2024 18:26:50] -> Initialize Scoring...
INFO:    [04/04/2024 18:26:50] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:26:58] -> Machine Learning...
INFO:    [04/04/2024 18:26:59] -> Pipeline executed in 9.36s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:27:02] -> Initialize Scoring...
INFO:    [04/04/2024 18:27:02] -> Preprocessing Run #11 of 12...
INFO:    [04/04/2024 18:27:02] -> Building Spectral Library...
INFO:    [04/04/2024 18:27:02] -> Initializing Experiment...
INFO:    [04/04/2024 18:27:02] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:27:02] -> Initialize Scoring...
INFO:    [04/04/2024 18:27:02] -> Generating Scan Map...
INFO:    [04/04/2024 18:30:53] -> Initializing Workpackages...
INFO:    [04/04/2024 18:30:53] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:30:54] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:30:54] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:30:54] -> Initializing Pipeline...
INFO:    [04/04/2024 18:30:54] -> Preprocessing Run #11 of 12...
INFO:    [04/04/2024 18:30:54] -> Initialize Scoring...
INFO:    [04/04/2024 18:30:54] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:31:03] -> Machine Learning...
INFO:    [04/04/2024 18:31:03] -> Pipeline executed in 8.97s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:31:05] -> Initializing Pipeline...
INFO:    [04/04/2024 18:31:05] -> Preprocessing Run #11 of 12...
INFO:    [04/04/2024 18:31:05] -> Initialize Scoring...
INFO:    [04/04/2024 18:31:05] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:31:14] -> Machine Learning...
INFO:    [04/04/2024 18:31:15] -> Pipeline executed in 10.28s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:31:17] -> Initialize Scoring...
INFO:    [04/04/2024 18:31:17] -> Preprocessing Run #12 of 12...
INFO:    [04/04/2024 18:31:17] -> Building Spectral Library...
INFO:    [04/04/2024 18:31:17] -> Initializing Experiment...
INFO:    [04/04/2024 18:31:17] -> Loading Spectral Libraries...
INFO:    [04/04/2024 18:31:17] -> Initialize Scoring...
INFO:    [04/04/2024 18:31:17] -> Generating Scan Map...
INFO:    [04/04/2024 18:37:01] -> Initializing Workpackages...
INFO:    [04/04/2024 18:37:01] -> Performing Basic Calibration...
INFO:    [04/04/2024 18:37:01] -> Identifying Calibration Peptides...
INFO:    [04/04/2024 18:37:01] -> Correcting Gradient Fine Structure...
INFO:    [04/04/2024 18:37:02] -> Initializing Pipeline...
INFO:    [04/04/2024 18:37:02] -> Preprocessing Run #12 of 12...
INFO:    [04/04/2024 18:37:02] -> Initialize Scoring...
INFO:    [04/04/2024 18:37:02] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:37:09] -> Machine Learning...
INFO:    [04/04/2024 18:37:09] -> Pipeline executed in 7.54s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:37:11] -> Initializing Pipeline...
INFO:    [04/04/2024 18:37:11] -> Preprocessing Run #12 of 12...
INFO:    [04/04/2024 18:37:11] -> Initialize Scoring...
INFO:    [04/04/2024 18:37:11] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:37:17] -> Machine Learning...
INFO:    [04/04/2024 18:37:19] -> Pipeline executed in 7.94s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [04/04/2024 18:37:20] -> Initialize Scoring...
INFO:    [04/04/2024 18:37:20] -> Initializing QC...
INFO:    [04/04/2024 18:37:20] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:37:20] -> Assigning ML Features...
INFO:    [04/04/2024 18:37:21] -> Generating Decoys...
INFO:    [04/04/2024 18:37:23] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:37:55] -> Releasing Raw Files...
INFO:    [04/04/2024 18:37:55] -> Machine Learning...
INFO:    [04/04/2024 18:38:07] -> Initializing HTRMS...
INFO:    [04/04/2024 18:38:07] -> Releasing Run Resources...
INFO:    [04/04/2024 18:38:07] -> Calculating Qvalues...
INFO:    [04/04/2024 18:38:07] -> Unique precursors: 27,617 of 30,794 | modified peptides: 24,393 of 27,225 | peptides: 24,085 of 26,833 |  protein groups: 3,582 (Qvalue <= 0.01) [001_Kalra01_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:38:07] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:38:07] -> Processed in 46.85s
INFO:    [04/04/2024 18:38:07] -> Initializing QC...
INFO:    [04/04/2024 18:38:07] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:38:07] -> Assigning ML Features...
INFO:    [04/04/2024 18:38:07] -> Generating Decoys...
INFO:    [04/04/2024 18:38:07] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:38:42] -> Releasing Raw Files...
INFO:    [04/04/2024 18:38:43] -> Machine Learning...
INFO:    [04/04/2024 18:38:53] -> Initializing HTRMS...
INFO:    [04/04/2024 18:38:53] -> Releasing Run Resources...
INFO:    [04/04/2024 18:38:53] -> Calculating Qvalues...
INFO:    [04/04/2024 18:38:53] -> Unique precursors: 27,589 of 30,794 | modified peptides: 24,336 of 27,225 | peptides: 24,009 of 26,833 |  protein groups: 3,608 (Qvalue <= 0.01) [002_Kalra02_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:38:53] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:38:53] -> Processed in 46.27s
INFO:    [04/04/2024 18:38:53] -> Initializing QC...
INFO:    [04/04/2024 18:38:53] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:38:53] -> Assigning ML Features...
INFO:    [04/04/2024 18:38:53] -> Generating Decoys...
INFO:    [04/04/2024 18:38:54] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:39:28] -> Releasing Raw Files...
INFO:    [04/04/2024 18:39:29] -> Machine Learning...
INFO:    [04/04/2024 18:39:40] -> Initializing HTRMS...
INFO:    [04/04/2024 18:39:40] -> Releasing Run Resources...
INFO:    [04/04/2024 18:39:40] -> Calculating Qvalues...
INFO:    [04/04/2024 18:39:40] -> Unique precursors: 27,620 of 30,794 | modified peptides: 24,455 of 27,225 | peptides: 24,135 of 26,833 |  protein groups: 3,649 (Qvalue <= 0.01) [003_Kalra03_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:39:40] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:39:41] -> Processed in 47.16s
INFO:    [04/04/2024 18:39:41] -> Initializing QC...
INFO:    [04/04/2024 18:39:41] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:39:41] -> Assigning ML Features...
INFO:    [04/04/2024 18:39:41] -> Generating Decoys...
INFO:    [04/04/2024 18:39:41] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:40:14] -> Releasing Raw Files...
INFO:    [04/04/2024 18:40:15] -> Machine Learning...
INFO:    [04/04/2024 18:40:26] -> Initializing HTRMS...
INFO:    [04/04/2024 18:40:26] -> Releasing Run Resources...
INFO:    [04/04/2024 18:40:26] -> Calculating Qvalues...
INFO:    [04/04/2024 18:40:26] -> Unique precursors: 24,412 of 30,794 | modified peptides: 21,724 of 27,225 | peptides: 21,439 of 26,833 |  protein groups: 3,342 (Qvalue <= 0.01) [004_Kalra04_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:40:26] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:40:27] -> Processed in 45.95s
INFO:    [04/04/2024 18:40:27] -> Initializing QC...
INFO:    [04/04/2024 18:40:27] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:40:27] -> Assigning ML Features...
INFO:    [04/04/2024 18:40:27] -> Generating Decoys...
INFO:    [04/04/2024 18:40:27] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:41:02] -> Releasing Raw Files...
INFO:    [04/04/2024 18:41:03] -> Machine Learning...
INFO:    [04/04/2024 18:41:11] -> Initializing HTRMS...
INFO:    [04/04/2024 18:41:11] -> Releasing Run Resources...
INFO:    [04/04/2024 18:41:11] -> Calculating Qvalues...
INFO:    [04/04/2024 18:41:11] -> Unique precursors: 27,337 of 30,794 | modified peptides: 24,122 of 27,225 | peptides: 23,845 of 26,833 |  protein groups: 3,549 (Qvalue <= 0.01) [001_Kalra01_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:41:11] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:41:12] -> Processed in 45.02s
INFO:    [04/04/2024 18:41:12] -> Initializing QC...
INFO:    [04/04/2024 18:41:12] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:41:12] -> Assigning ML Features...
INFO:    [04/04/2024 18:41:12] -> Generating Decoys...
INFO:    [04/04/2024 18:41:12] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:41:45] -> Releasing Raw Files...
INFO:    [04/04/2024 18:41:46] -> Machine Learning...
INFO:    [04/04/2024 18:41:56] -> Initializing HTRMS...
INFO:    [04/04/2024 18:41:56] -> Releasing Run Resources...
INFO:    [04/04/2024 18:41:56] -> Calculating Qvalues...
INFO:    [04/04/2024 18:41:57] -> Unique precursors: 27,299 of 30,794 | modified peptides: 24,116 of 27,225 | peptides: 23,814 of 26,833 |  protein groups: 3,576 (Qvalue <= 0.01) [002_Kalra02_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:41:57] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:41:57] -> Processed in 45.08s
INFO:    [04/04/2024 18:41:57] -> Initializing QC...
INFO:    [04/04/2024 18:41:57] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:41:57] -> Assigning ML Features...
INFO:    [04/04/2024 18:41:57] -> Generating Decoys...
INFO:    [04/04/2024 18:41:57] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:42:30] -> Releasing Raw Files...
INFO:    [04/04/2024 18:42:31] -> Machine Learning...
INFO:    [04/04/2024 18:42:41] -> Initializing HTRMS...
INFO:    [04/04/2024 18:42:41] -> Releasing Run Resources...
INFO:    [04/04/2024 18:42:41] -> Calculating Qvalues...
INFO:    [04/04/2024 18:42:41] -> Unique precursors: 25,731 of 30,794 | modified peptides: 22,728 of 27,225 | peptides: 22,454 of 26,833 |  protein groups: 3,456 (Qvalue <= 0.01) [003_Kalra03_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:42:41] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:42:41] -> Processed in 44.82s
INFO:    [04/04/2024 18:42:41] -> Initializing QC...
INFO:    [04/04/2024 18:42:41] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:42:42] -> Assigning ML Features...
INFO:    [04/04/2024 18:42:42] -> Generating Decoys...
INFO:    [04/04/2024 18:42:42] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:43:16] -> Releasing Raw Files...
INFO:    [04/04/2024 18:43:16] -> Machine Learning...
INFO:    [04/04/2024 18:43:28] -> Initializing HTRMS...
INFO:    [04/04/2024 18:43:28] -> Releasing Run Resources...
INFO:    [04/04/2024 18:43:28] -> Calculating Qvalues...
INFO:    [04/04/2024 18:43:28] -> Unique precursors: 22,541 of 30,794 | modified peptides: 20,017 of 27,225 | peptides: 19,791 of 26,833 |  protein groups: 3,187 (Qvalue <= 0.01) [004_Kalra04_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:43:28] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:43:28] -> Processed in 46.47s
INFO:    [04/04/2024 18:43:28] -> Initializing QC...
INFO:    [04/04/2024 18:43:28] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:43:28] -> Assigning ML Features...
INFO:    [04/04/2024 18:43:28] -> Generating Decoys...
INFO:    [04/04/2024 18:43:28] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:44:03] -> Releasing Raw Files...
INFO:    [04/04/2024 18:44:04] -> Machine Learning...
INFO:    [04/04/2024 18:44:15] -> Initializing HTRMS...
INFO:    [04/04/2024 18:44:15] -> Releasing Run Resources...
INFO:    [04/04/2024 18:44:15] -> Calculating Qvalues...
INFO:    [04/04/2024 18:44:15] -> Unique precursors: 28,142 of 30,794 | modified peptides: 24,876 of 27,225 | peptides: 24,557 of 26,833 |  protein groups: 3,650 (Qvalue <= 0.01) [001_Kalra01_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:44:15] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:44:15] -> Processed in 47.21s
INFO:    [04/04/2024 18:44:15] -> Initializing QC...
INFO:    [04/04/2024 18:44:15] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:44:15] -> Assigning ML Features...
INFO:    [04/04/2024 18:44:15] -> Generating Decoys...
INFO:    [04/04/2024 18:44:15] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:44:50] -> Releasing Raw Files...
INFO:    [04/04/2024 18:44:50] -> Machine Learning...
INFO:    [04/04/2024 18:45:01] -> Initializing HTRMS...
INFO:    [04/04/2024 18:45:01] -> Releasing Run Resources...
INFO:    [04/04/2024 18:45:01] -> Calculating Qvalues...
INFO:    [04/04/2024 18:45:02] -> Unique precursors: 28,962 of 30,794 | modified peptides: 25,585 of 27,225 | peptides: 25,249 of 26,833 |  protein groups: 3,730 (Qvalue <= 0.01) [002_Kalra02_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:45:02] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:45:02] -> Processed in 46.54s
INFO:    [04/04/2024 18:45:02] -> Initializing QC...
INFO:    [04/04/2024 18:45:02] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:45:02] -> Assigning ML Features...
INFO:    [04/04/2024 18:45:02] -> Generating Decoys...
INFO:    [04/04/2024 18:45:02] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:45:38] -> Releasing Raw Files...
INFO:    [04/04/2024 18:45:38] -> Machine Learning...
INFO:    [04/04/2024 18:45:50] -> Initializing HTRMS...
INFO:    [04/04/2024 18:45:50] -> Releasing Run Resources...
INFO:    [04/04/2024 18:45:50] -> Calculating Qvalues...
INFO:    [04/04/2024 18:45:50] -> Unique precursors: 28,474 of 30,794 | modified peptides: 25,147 of 27,225 | peptides: 24,822 of 26,833 |  protein groups: 3,671 (Qvalue <= 0.01) [003_Kalra03_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:45:50] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:45:50] -> Processed in 48.55s
INFO:    [04/04/2024 18:45:50] -> Initializing QC...
INFO:    [04/04/2024 18:45:50] -> Determining Calibration Parameter...
INFO:    [04/04/2024 18:45:50] -> Assigning ML Features...
INFO:    [04/04/2024 18:45:50] -> Generating Decoys...
INFO:    [04/04/2024 18:45:50] -> Extracting Ion Currents...
INFO:    [04/04/2024 18:46:25] -> Releasing Raw Files...
INFO:    [04/04/2024 18:46:26] -> Machine Learning...
INFO:    [04/04/2024 18:46:37] -> Initializing HTRMS...
INFO:    [04/04/2024 18:46:37] -> Releasing Run Resources...
INFO:    [04/04/2024 18:46:38] -> Calculating Qvalues...
INFO:    [04/04/2024 18:46:38] -> Unique precursors: 22,446 of 30,794 | modified peptides: 19,915 of 27,225 | peptides: 19,665 of 26,833 |  protein groups: 3,190 (Qvalue <= 0.01) [004_Kalra04_500ng_T120SW_B2.wiff]
INFO:    [04/04/2024 18:46:38] -> Collapsing Search Tree...
INFO:    [04/04/2024 18:46:38] -> Processed in 47.5s
INFO:    [04/04/2024 18:46:38] -> Normalizing Cscores...
INFO:    [04/04/2024 18:46:38] -> Initializing Protein Groups...
INFO:    [04/04/2024 18:46:47] -> Correcting Interferences...
INFO:    [04/04/2024 18:46:58] -> Calculating Global CVs
INFO:    [04/04/2024 18:46:58] -> Calculating Precursor Quantities...
INFO:    [04/04/2024 18:46:58] -> Normalizing Quantification...
INFO:    [04/04/2024 18:46:59] -> Performing Local Normalization...
INFO:    [04/04/2024 18:46:59] -> Calculating Global CVs
INFO:    [04/04/2024 18:46:59] -> Calculating Condition CVs
INFO:    [04/04/2024 18:47:00] -> Excluding Library Duplicates...
INFO:    [04/04/2024 18:47:01] -> Calculating Global CVs
INFO:    [04/04/2024 18:47:01] -> Building Protein Groups...
INFO:    [04/04/2024 18:47:08] -> Calculating Run-Wise Protein Group FDR...
INFO:    [04/04/2024 18:47:09] -> Annotating Protein Single Hits...
INFO:    [04/04/2024 18:47:10] -> Calculating Global CVs
INFO:    [04/04/2024 18:47:10] -> Updating Identification Counts...
INFO:    [04/04/2024 18:47:10] -> Resetting existing imputation...
INFO:    [04/04/2024 18:47:10] -> Calculating Protein Quantities...
INFO:    [04/04/2024 18:47:11] -> Calculating Protein Quantities...
INFO:    [04/04/2024 18:47:11] -> Calculating MaxLFQ Protein Quantities...
INFO:    [04/04/2024 18:47:14] -> Collapsing PTM-Locations...
INFO:    [04/04/2024 18:47:14] -> Creating Protein Map...
INFO:    [04/04/2024 18:47:14] -> Compiling Run Summary Information...
INFO:    [04/04/2024 18:47:14] -> Running Post Analysis Processes...
INFO:    [04/04/2024 18:47:20] -> Saving Qc Data...
INFO:    [04/04/2024 18:47:20] -> Writing Summary Information...
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,424 of 30,794 | modified peptides: 24,200 of 27,225 | peptides: 23,892 of 26,833 |  protein groups: 3,400 (Qvalue <= 0.01) for run #1 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,391 of 30,794 | modified peptides: 24,138 of 27,225 | peptides: 23,811 of 26,833 |  protein groups: 3,422 (Qvalue <= 0.01) for run #2 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,414 of 30,794 | modified peptides: 24,250 of 27,225 | peptides: 23,930 of 26,833 |  protein groups: 3,467 (Qvalue <= 0.01) for run #3 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 24,256 of 30,794 | modified peptides: 21,568 of 27,225 | peptides: 21,283 of 26,833 |  protein groups: 3,197 (Qvalue <= 0.01) for run #4 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,130 of 30,794 | modified peptides: 23,915 of 27,225 | peptides: 23,638 of 26,833 |  protein groups: 3,359 (Qvalue <= 0.01) for run #5 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,113 of 30,794 | modified peptides: 23,930 of 27,225 | peptides: 23,628 of 26,833 |  protein groups: 3,406 (Qvalue <= 0.01) for run #6 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 25,527 of 30,794 | modified peptides: 22,524 of 27,225 | peptides: 22,250 of 26,833 |  protein groups: 3,269 (Qvalue <= 0.01) for run #7 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 22,421 of 30,794 | modified peptides: 19,897 of 27,225 | peptides: 19,671 of 26,833 |  protein groups: 3,074 (Qvalue <= 0.01) for run #8 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 27,948 of 30,794 | modified peptides: 24,682 of 27,225 | peptides: 24,363 of 26,833 |  protein groups: 3,472 (Qvalue <= 0.01) for run #9 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 28,730 of 30,794 | modified peptides: 25,353 of 27,225 | peptides: 25,017 of 26,833 |  protein groups: 3,527 (Qvalue <= 0.01) for run #10 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 28,260 of 30,794 | modified peptides: 24,933 of 27,225 | peptides: 24,608 of 26,833 |  protein groups: 3,478 (Qvalue <= 0.01) for run #11 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 22,336 of 30,794 | modified peptides: 19,805 of 27,225 | peptides: 19,555 of 26,833 |  protein groups: 3,081 (Qvalue <= 0.01) for run #12 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [04/04/2024 18:47:20] -> Unique precursors: 30,438 of 30,794 | modified peptides: 26,874 of 27,225 | peptides: 26,483 of 26,833 |  protein groups: 3,604 (Qvalue <= 0.01) for whole experiment "dia-riken-test"

INFO:    [04/04/2024 18:47:20] -> Saving SNE File...
INFO:    [04/04/2024 18:47:20] -> Automatic SNE storage disabled
INFO:    [04/04/2024 18:47:20] -> Current Experiment had 2 Warnings and 0 Errors.
INFO:    [04/04/2024 18:47:20] -> Pipeline executed in 1.45h - Current Experiment had 2 Warnings and 0 Errors.
INFO:    [05/04/2024 13:20:58] -> Initializing Pipeline...
INFO:    [05/04/2024 13:20:58] -> Calculating Qvalues...
INFO:    [05/04/2024 13:20:58] -> Saving...
INFO:    [09/05/2024 14:16:05] -> Updating Quantities...
INFO:    [09/05/2024 14:16:05] -> Unifying Meta...
INFO:    [09/05/2024 14:16:05] -> Normalizing Cscores...
INFO:    [09/05/2024 14:16:05] -> Calculating Global CVs
INFO:    [09/05/2024 14:16:05] -> Linking References...
INFO:    [09/05/2024 14:16:05] -> Initializing Protein Groups...
INFO:    [09/05/2024 14:16:10] -> Building Protein Groups...
INFO:    [09/05/2024 14:16:10] -> Calculating Run-Wise Protein Group FDR...
INFO:    [09/05/2024 14:16:11] -> Annotating Protein Single Hits...
INFO:    [09/05/2024 14:16:11] -> Normalizing Quantification...
INFO:    [09/05/2024 14:16:11] -> Calculating Global CVs
INFO:    [09/05/2024 14:16:12] -> Updating Identification Counts...
INFO:    [09/05/2024 14:16:12] -> Resetting existing imputation...
INFO:    [09/05/2024 14:16:12] -> Calculating Protein Quantities...
INFO:    [09/05/2024 14:16:12] -> Calculating Protein Quantities...
INFO:    [09/05/2024 14:16:12] -> Calculating MaxLFQ Protein Quantities...
INFO:    [09/05/2024 14:16:14] -> Collapsing PTM-Locations...
INFO:    [09/05/2024 14:16:14] -> Calculating Condition CVs
INFO:    [09/05/2024 14:16:14] -> Creating Protein Map...
INFO:    [09/05/2024 14:16:14] -> Compiling Run Summary Information...
INFO:    [09/05/2024 14:16:14] -> Running Post Analysis Processes...
INFO:    [09/05/2024 14:16:19] -> Writing Summary Information...
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,424 of 30,794 | modified peptides: 24,200 of 27,225 | peptides: 23,892 of 26,833 |  protein groups: 3,400 (Qvalue <= 0.01) for run #1 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,391 of 30,794 | modified peptides: 24,138 of 27,225 | peptides: 23,811 of 26,833 |  protein groups: 3,422 (Qvalue <= 0.01) for run #2 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,414 of 30,794 | modified peptides: 24,250 of 27,225 | peptides: 23,930 of 26,833 |  protein groups: 3,467 (Qvalue <= 0.01) for run #3 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 24,256 of 30,794 | modified peptides: 21,568 of 27,225 | peptides: 21,283 of 26,833 |  protein groups: 3,197 (Qvalue <= 0.01) for run #4 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,130 of 30,794 | modified peptides: 23,915 of 27,225 | peptides: 23,638 of 26,833 |  protein groups: 3,359 (Qvalue <= 0.01) for run #5 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,113 of 30,794 | modified peptides: 23,930 of 27,225 | peptides: 23,628 of 26,833 |  protein groups: 3,406 (Qvalue <= 0.01) for run #6 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 25,527 of 30,794 | modified peptides: 22,524 of 27,225 | peptides: 22,250 of 26,833 |  protein groups: 3,269 (Qvalue <= 0.01) for run #7 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 22,421 of 30,794 | modified peptides: 19,897 of 27,225 | peptides: 19,671 of 26,833 |  protein groups: 3,074 (Qvalue <= 0.01) for run #8 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 27,948 of 30,794 | modified peptides: 24,682 of 27,225 | peptides: 24,363 of 26,833 |  protein groups: 3,472 (Qvalue <= 0.01) for run #9 "001_Kalra01_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 28,730 of 30,794 | modified peptides: 25,353 of 27,225 | peptides: 25,017 of 26,833 |  protein groups: 3,527 (Qvalue <= 0.01) for run #10 "002_Kalra02_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 28,260 of 30,794 | modified peptides: 24,933 of 27,225 | peptides: 24,608 of 26,833 |  protein groups: 3,478 (Qvalue <= 0.01) for run #11 "003_Kalra03_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 22,336 of 30,794 | modified peptides: 19,805 of 27,225 | peptides: 19,555 of 26,833 |  protein groups: 3,081 (Qvalue <= 0.01) for run #12 "004_Kalra04_500ng_T120SW_B2.wiff"
INFO:    [09/05/2024 14:16:19] -> Unique precursors: 30,438 of 30,794 | modified peptides: 26,874 of 27,225 | peptides: 26,483 of 26,833 |  protein groups: 3,604 (Qvalue <= 0.01) for whole experiment "dia-riken-test"

INFO:    [09/05/2024 14:16:19] -> Current Experiment had 0 Warnings and 0 Errors.
INFO:    [09/05/2024 14:16:19] -> Pipeline executed in 34.81s - Current Experiment had 0 Warnings and 0 Errors.
INFO:    [09/05/2024 14:16:45] -> Initializing Pipeline...
INFO:    [09/05/2024 14:16:46] -> Generating Scan Map...
INFO:    [09/05/2024 14:17:38] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:17:40] -> Releasing Raw Files...
INFO:    [09/05/2024 14:17:40] -> Initializing HTRMS...
INFO:    [09/05/2024 14:17:40] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:17:40] -> Processed in 55.33s
INFO:    [09/05/2024 14:17:40] -> Generating Scan Map...
INFO:    [09/05/2024 14:19:09] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:19:11] -> Releasing Raw Files...
INFO:    [09/05/2024 14:19:11] -> Initializing HTRMS...
INFO:    [09/05/2024 14:19:12] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:19:12] -> Processed in 1.52m
INFO:    [09/05/2024 14:19:12] -> Generating Scan Map...
INFO:    [09/05/2024 14:20:22] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:20:23] -> Releasing Raw Files...
INFO:    [09/05/2024 14:20:24] -> Initializing HTRMS...
INFO:    [09/05/2024 14:20:24] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:20:24] -> Processed in 1.21m
INFO:    [09/05/2024 14:20:24] -> Generating Scan Map...
INFO:    [09/05/2024 14:21:20] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:21:21] -> Releasing Raw Files...
INFO:    [09/05/2024 14:21:21] -> Initializing HTRMS...
INFO:    [09/05/2024 14:21:21] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:21:22] -> Processed in 57.24s
INFO:    [09/05/2024 14:21:22] -> Generating Scan Map...
INFO:    [09/05/2024 14:22:10] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:22:11] -> Releasing Raw Files...
INFO:    [09/05/2024 14:22:11] -> Initializing HTRMS...
INFO:    [09/05/2024 14:22:11] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:22:12] -> Processed in 50.02s
INFO:    [09/05/2024 14:22:12] -> Generating Scan Map...
INFO:    [09/05/2024 14:23:05] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:23:06] -> Releasing Raw Files...
INFO:    [09/05/2024 14:23:06] -> Initializing HTRMS...
INFO:    [09/05/2024 14:23:06] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:23:07] -> Processed in 55s
INFO:    [09/05/2024 14:23:07] -> Generating Scan Map...
INFO:    [09/05/2024 14:23:54] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:23:55] -> Releasing Raw Files...
INFO:    [09/05/2024 14:23:55] -> Initializing HTRMS...
INFO:    [09/05/2024 14:23:56] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:23:56] -> Processed in 49.16s
INFO:    [09/05/2024 14:23:56] -> Generating Scan Map...
INFO:    [09/05/2024 14:24:33] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:24:34] -> Releasing Raw Files...
INFO:    [09/05/2024 14:24:34] -> Initializing HTRMS...
INFO:    [09/05/2024 14:24:35] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:24:35] -> Processed in 39.09s
INFO:    [09/05/2024 14:24:35] -> Generating Scan Map...
INFO:    [09/05/2024 14:25:46] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:25:48] -> Releasing Raw Files...
INFO:    [09/05/2024 14:25:48] -> Initializing HTRMS...
INFO:    [09/05/2024 14:25:48] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:25:48] -> Processed in 1.23m
INFO:    [09/05/2024 14:25:48] -> Generating Scan Map...
INFO:    [09/05/2024 14:26:55] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:26:57] -> Releasing Raw Files...
INFO:    [09/05/2024 14:26:57] -> Initializing HTRMS...
INFO:    [09/05/2024 14:26:58] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:26:58] -> Processed in 1.15m
INFO:    [09/05/2024 14:26:58] -> Generating Scan Map...
INFO:    [09/05/2024 14:28:16] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:28:17] -> Releasing Raw Files...
INFO:    [09/05/2024 14:28:18] -> Initializing HTRMS...
INFO:    [09/05/2024 14:28:18] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:28:18] -> Processed in 1.34m
INFO:    [09/05/2024 14:28:18] -> Generating Scan Map...
INFO:    [09/05/2024 14:29:15] -> Extracting Ion Currents...
INFO:    [09/05/2024 14:29:17] -> Releasing Raw Files...
INFO:    [09/05/2024 14:29:17] -> Initializing HTRMS...
INFO:    [09/05/2024 14:29:17] -> Collapsing Search Tree...
INFO:    [09/05/2024 14:29:17] -> Processed in 58.96s
INFO:    [09/05/2024 14:29:17] -> Current Experiment had 0 Warnings and 0 Errors.
INFO:    [09/05/2024 14:29:17] -> Pipeline executed in 12.54m - Current Experiment had 0 Warnings and 0 Errors.
[END-LOG]
